Testis networks

To get the full list of phenotypic variables, please check the menu below.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

Variable description

PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

SampleSubjectGender
AgeDTH-HRDY
SMAT-SSCR
SMRIN
SMTS
SMUBRID
Isch. time
Time point
GTEX-111CU-1726-SM-5EGHM GTEX-111CU 1 50-59 0 0 6.9 Testis 473 108 Actual Death
GTEX-111FC-1926-SM-5GZYC GTEX-111FC 1 60-69 1 2 5.9 Testis 473 1116 Presumed Death
GTEX-111VG-1926-SM-5GIDO GTEX-111VG 1 60-69 3 1 5.8 Testis 473 1061 Actual Death
GTEX-111YS-2026-SM-5EGGL GTEX-111YS 1 60-69 0 0 6.8 Testis 473 189 Actual Death
GTEX-117XS-2026-SM-5GID1 GTEX-117XS 1 60-69 2 1 6.8 Testis 473 896 Actual Death
GTEX-117YW-1526-SM-5EGGP GTEX-117YW 1 50-59 3 1 6.6 Testis 473 886 Actual Death
GTEX-117YX-2026-SM-5GIEF GTEX-117YX 1 50-59 0 0 6.8 Testis 473 117 Actual Death
GTEX-1192W-2326-SM-5N9BS GTEX-1192W 1 60-69 2 2 6.5 Testis 473 788 Actual Death
GTEX-11DXY-0226-SM-5H123 GTEX-11DXY 1 60-69 2 1 5.8 Testis 473 882 Presumed Death
GTEX-11DXZ-2126-SM-59881 GTEX-11DXZ 1 50-59 0 0 8 Testis 473 322 Actual Death
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