To get the full list of phenotypic variables, please check the menu below.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.
# | Tissue | Tool | netZoo release | Network |
PPI |
Regulation prior | Expression |
Regulator |
nReg |
Genes | Samples | Precision |
Reference |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Uterus | PANDA | netZooM 0.1 | Motif | TF | 644 | 30243 | 90 | D | ||||
2 | Uterus | PUMA | netZooM 0.3 | - | miRanda | miRNA | 643 | 16161 | 90 | D | |||
3 | Uterus | PUMA | netZooM 0.3 | - | TargetScan | miRNA | 643 | 16161 | 90 | D |
Variable description
PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.
Sample | Subject | Gender |
Age | DTH-HRDY |
SMAT-SSCR |
SMRIN |
SMTS |
SMUBRID |
Isch. time |
Time point |
---|---|---|---|---|---|---|---|---|---|---|
GTEX-1117F-2426-SM-5EGGH | GTEX-1117F | 2 | 60-69 | 4 | 1 | 6.3 | Uterus | 995 | 1332 | Actual Death |
GTEX-113JC-2226-SM-5EGJG | GTEX-113JC | 2 | 50-59 | 2 | 1 | 6.3 | Uterus | 995 | 676 | Actual Death |
GTEX-11DXX-1526-SM-5H115 | GTEX-11DXX | 2 | 60-69 | 0 | 1 | 7.7 | Uterus | 995 | 118 | Actual Death |
GTEX-11EM3-1926-SM-5987U | GTEX-11EM3 | 2 | 20-29 | 0 | 0 | 8.2 | Uterus | 995 | 203 | Actual Death |
GTEX-11EMC-1826-SM-5A5JT | GTEX-11EMC | 2 | 60-69 | 2 | 1 | 6.6 | Uterus | 995 | 732 | Actual Death |
GTEX-11GSP-2426-SM-5N9BD | GTEX-11GSP | 2 | 60-69 | 2 | 2 | 6.5 | Uterus | 995 | 802 | Actual Death |
GTEX-11I78-2126-SM-5A5K8 | GTEX-11I78 | 2 | 50-59 | 0 | 1 | 8.3 | Uterus | 995 | 145 | Actual Death |
GTEX-11P81-1626-SM-5BC52 | GTEX-11P81 | 2 | 30-39 | 0 | 0 | 8.3 | Uterus | 995 | 289 | Actual Death |
GTEX-11ZTS-2326-SM-5EQMY | GTEX-11ZTS | 2 | 60-69 | 2 | 2 | 5.8 | Uterus | 995 | 701 | Actual Death |
GTEX-11ZTT-1726-SM-5EQL4 | GTEX-11ZTT | 2 | 60-69 | 0 | 1 | 7.9 | Uterus | 995 | 204 | Actual Death |
GTEX-12WSD-2826-SM-59HKT | GTEX-12WSD | 2 | 60-69 | 2 | 1 | 7 | Uterus | 995 | 553 | Actual Death |
GTEX-12WSG-2126-SM-5EGJ7 | GTEX-12WSG | 2 | 50-59 | 0 | 0 | 7.7 | Uterus | 995 | 382 | Actual Death |
GTEX-12WSK-2026-SM-5CVNB | GTEX-12WSK | 2 | 40-49 | 0 | 1 | 6.5 | Uterus | 995 | 194 | Actual Death |
GTEX-12ZZX-2126-SM-5LZVL | GTEX-12ZZX | 2 | 40-49 | 1 | 1 | 6.4 | Uterus | 995 | 683 | Actual Death |
GTEX-1313W-2826-SM-5P9G1 | GTEX-1313W | 2 | 50-59 | 2 | 1 | 6.4 | Uterus | 995 | 731 | Actual Death |
GTEX-131XG-2026-SM-5GCN5 | GTEX-131XG | 2 | 50-59 | 0 | 1 | 8.9 | Uterus | 995 | 152 | Actual Death |
GTEX-131YS-2326-SM-5IJFJ | GTEX-131YS | 2 | 60-69 | 2 | 1 | 5.8 | Uterus | 995 | 1009 | Actual Death |
GTEX-132AR-1526-SM-5KM1L | GTEX-132AR | 2 | 50-59 | 0 | 0 | 7 | Uterus | 995 | 107 | Actual Death |
GTEX-1399S-2226-SM-5IFEW | GTEX-1399S | 2 | 30-39 | 0 | 1 | 8.4 | Uterus | 995 | 144 | Actual Death |
GTEX-1399U-1326-SM-5IJET | GTEX-1399U | 2 | 50-59 | 0 | 1 | 6.2 | Uterus | 995 | 203 | Actual Death |
GTEX-139D8-2526-SM-5N9G3 | GTEX-139D8 | 2 | 30-39 | 0 | 1 | 5.7 | Uterus | 995 | 468 | Actual Death |
GTEX-13D11-1226-SM-5IFGA | GTEX-13D11 | 2 | 50-59 | 0 | 1 | 8 | Uterus | 995 | 122 | Actual Death |
GTEX-13FTX-1026-SM-5J2O5 | GTEX-13FTX | 2 | 20-29 | 0 | 0 | 7.5 | Uterus | 995 | 177 | Actual Death |
GTEX-13N11-1126-SM-5KM41 | GTEX-13N11 | 2 | 50-59 | 0 | 0 | 7.6 | Uterus | 995 | 172 | Actual Death |
GTEX-13OVI-1026-SM-5L3EM | GTEX-13OVI | 2 | 60-69 | 0 | 1 | 8.4 | Uterus | 995 | 173 | Actual Death |
GTEX-13OVJ-2326-SM-5IJGA | GTEX-13OVJ | 2 | 50-59 | 2 | 1 | 6.5 | Uterus | 995 | 1165 | Actual Death |
GTEX-13PL7-2026-SM-5IFGK | GTEX-13PL7 | 2 | 60-69 | 0 | 1 | 7.8 | Uterus | 995 | 172 | Actual Death |
GTEX-13QBU-1626-SM-5LU4S | GTEX-13QBU | 2 | 40-49 | 0 | 1 | 7.5 | Uterus | 995 | 217 | Actual Death |
GTEX-13S7M-1726-SM-5RQK3 | GTEX-13S7M | 2 | 60-69 | 2 | 1 | 5.9 | Uterus | 995 | 614 | Actual Death |
GTEX-13U4I-1926-SM-5LU39 | GTEX-13U4I | 2 | 40-49 | 0 | 1 | 6.8 | Uterus | 995 | 450 | Actual Death |
GTEX-13VXT-1626-SM-5IJES | GTEX-13VXT | 2 | 20-29 | 0 | 1 | 6.5 | Uterus | 995 | 538 | Actual Death |
GTEX-13W3W-1426-SM-5LU56 | GTEX-13W3W | 2 | 60-69 | 0 | 1 | 7.9 | Uterus | 995 | 232 | Actual Death |
GTEX-145ME-1326-SM-5O98Q | GTEX-145ME | 2 | 40-49 | 0 | 1 | 8.5 | Uterus | 995 | 299 | Actual Death |
GTEX-14BIM-2226-SM-5SI8Y | GTEX-14BIM | 2 | 60-69 | 3 | 1 | 6.9 | Uterus | 995 | 1273 | Actual Death |
GTEX-14BMU-1826-SM-5RQII | GTEX-14BMU | 2 | 20-29 | 0 | 1 | 8.7 | Uterus | 995 | 1587 | Actual Death |
GTEX-N7MT-0726-SM-3TW8S | GTEX-N7MT | 2 | 60-69 | 4 | 0 | 5.5 | Uterus | 995 | 512 | Actual Death |
GTEX-OHPK-2026-SM-3MJH7 | GTEX-OHPK | 2 | 50-59 | 0 | 1 | 6.6 | Uterus | 995 | 321 | Actual Death |
GTEX-OHPL-2026-SM-3TW8R | GTEX-OHPL | 2 | 60-69 | 0 | 1 | 7.6 | Uterus | 995 | 154 | Actual Death |
GTEX-P4PP-2026-SM-3P61N | GTEX-P4PP | 2 | 30-39 | 0 | 1 | 8.1 | Uterus | 995 | 151 | Actual Death |
GTEX-P4QT-2026-SM-3NMCJ | GTEX-P4QT | 2 | 50-59 | 0 | 1 | 7.8 | Uterus | 995 | 175 | Actual Death |
GTEX-P78B-2526-SM-3P5ZY | GTEX-P78B | 2 | 40-49 | - | 1 | 8 | Uterus | 995 | 615 | Actual Death |
GTEX-POMQ-1226-SM-3P61F | GTEX-POMQ | 2 | 20-29 | 0 | 1 | 8.4 | Uterus | 995 | 265 | Actual Death |
GTEX-PWCY-1426-SM-48TCT | GTEX-PWCY | 2 | 20-29 | 0 | 0 | 6.7 | Uterus | 995 | 255 | Actual Death |
GTEX-PWN1-2026-SM-48TD9 | GTEX-PWN1 | 2 | 40-49 | 0 | 1 | 8.3 | Uterus | 995 | 162 | Actual Death |
GTEX-PWOO-1526-SM-48TCK | GTEX-PWOO | 2 | 40-49 | 0 | 1 | 8.1 | Uterus | 995 | 214 | Actual Death |
GTEX-PX3G-2026-SM-48U1H | GTEX-PX3G | 2 | 20-29 | 0 | 1 | 8.3 | Uterus | 995 | 199 | Actual Death |
GTEX-Q734-1626-SM-48U1B | GTEX-Q734 | 2 | 40-49 | 0 | 1 | 7.1 | Uterus | 995 | 117 | Actual Death |
GTEX-QCQG-1326-SM-48U24 | GTEX-QCQG | 2 | 50-59 | 0 | 1 | 8 | Uterus | 995 | 234 | Actual Death |
GTEX-R55G-1626-SM-48FF4 | GTEX-R55G | 2 | 40-49 | 0 | 1 | 8.8 | Uterus | 995 | 147 | Actual Death |
GTEX-RTLS-2426-SM-46MUO | GTEX-RTLS | 2 | 60-69 | 4 | 1 | 7.1 | Uterus | 995 | 693 | Actual Death |
GTEX-RU1J-1026-SM-46MUR | GTEX-RU1J | 2 | 20-29 | 0 | 1 | 8.7 | Uterus | 995 | 243 | Actual Death |
GTEX-RU72-2626-SM-4GIE1 | GTEX-RU72 | 2 | 50-59 | 2 | 2 | 6.7 | Uterus | 995 | 530 | Actual Death |
GTEX-RU72-2626-SM-4TT75 | GTEX-RU72 | 2 | 50-59 | 2 | 2 | 6.7 | Uterus | 995 | 530 | Actual Death |
GTEX-RWS6-1326-SM-47JXB | GTEX-RWS6 | 2 | 60-69 | 0 | 1 | 7.5 | Uterus | 995 | 197 | Actual Death |
GTEX-S32W-1426-SM-4AD66 | GTEX-S32W | 2 | 50-59 | 0 | 1 | 7.3 | Uterus | 995 | 331 | Actual Death |
GTEX-S341-1026-SM-4AD71 | GTEX-S341 | 2 | 40-49 | 0 | 1 | 7.1 | Uterus | 995 | 190 | Actual Death |
GTEX-S4UY-1226-SM-4AD51 | GTEX-S4UY | 2 | 40-49 | 0 | 1 | 8 | Uterus | 995 | 427 | Actual Death |
GTEX-S7SF-0826-SM-4AD4W | GTEX-S7SF | 2 | 20-29 | 0 | 0 | 7.9 | Uterus | 995 | 298 | Actual Death |
GTEX-T2IS-2226-SM-4DM65 | GTEX-T2IS | 2 | 20-29 | 1 | 2 | 8.4 | Uterus | 995 | 1214 | Actual Death |
GTEX-T5JW-1526-SM-4DM5E | GTEX-T5JW | 2 | 20-29 | 0 | 1 | 8.1 | Uterus | 995 | 235 | Actual Death |
GTEX-T6MO-1526-SM-4DM57 | GTEX-T6MO | 2 | 40-49 | 0 | 1 | 8.1 | Uterus | 995 | 162 | Actual Death |
GTEX-TMMY-2226-SM-4DXTN | GTEX-TMMY | 2 | 40-49 | 0 | 1 | 7.5 | Uterus | 995 | 456 | Actual Death |
GTEX-TSE9-2626-SM-4DXV2 | GTEX-TSE9 | 2 | 60-69 | 0 | 1 | 5.8 | Uterus | 995 | 1202 | Actual Death |
GTEX-U3ZN-0726-SM-4DXT5 | GTEX-U3ZN | 2 | 30-39 | 0 | 1 | 8.8 | Uterus | 995 | 123 | Actual Death |
GTEX-UPIC-1526-SM-4IHLU | GTEX-UPIC | 2 | 20-29 | 0 | 1 | 7.6 | Uterus | 995 | 245 | Actual Death |
GTEX-W5WG-1326-SM-4LMI9 | GTEX-W5WG | 2 | 50-59 | 0 | 1 | 7 | Uterus | 995 | 244 | Actual Death |
GTEX-WEY5-0726-SM-4LMID | GTEX-WEY5 | 2 | 40-49 | 0 | 1 | 8.4 | Uterus | 995 | 221 | Actual Death |
GTEX-WI4N-2426-SM-4OOSC | GTEX-WI4N | 2 | 40-49 | 0 | 2 | 6.7 | Uterus | 995 | 782 | Actual Death |
GTEX-WWYW-2826-SM-4MVOQ | GTEX-WWYW | 2 | 50-59 | 3 | 2 | 6.1 | Uterus | 995 | 853 | Actual Death |
GTEX-WXYG-1326-SM-4ONCN | GTEX-WXYG | 2 | 50-59 | 0 | 1 | 7.4 | Uterus | 995 | 172 | Actual Death |
GTEX-WYVS-1226-SM-4ONCL | GTEX-WYVS | 2 | 40-49 | 0 | 1 | 8.2 | Uterus | 995 | 268 | Actual Death |
GTEX-XUJ4-1526-SM-4BONU | GTEX-XUJ4 | 2 | 60-69 | 0 | 1 | 8.6 | Uterus | 995 | 136 | Actual Death |
GTEX-XUW1-0226-SM-4BOOS | GTEX-XUW1 | 2 | 50-59 | 0 | 0 | 8.8 | Uterus | 995 | 284 | Actual Death |
GTEX-XUZC-0926-SM-4BOQF | GTEX-XUZC | 2 | 30-39 | 0 | 1 | 8.5 | Uterus | 995 | 120 | Actual Death |
GTEX-XV7Q-1526-SM-4BRWB | GTEX-XV7Q | 2 | 40-49 | 0 | 1 | 7.2 | Uterus | 995 | 102 | Actual Death |
GTEX-XYKS-1626-SM-4BRUQ | GTEX-XYKS | 2 | 60-69 | 0 | 1 | 8.2 | Uterus | 995 | 208 | Actual Death |
GTEX-Y114-1826-SM-4TT87 | GTEX-Y114 | 2 | 50-59 | 0 | 1 | 8.9 | Uterus | 995 | 182 | Actual Death |
GTEX-Y3IK-2126-SM-4YCDS | GTEX-Y3IK | 2 | 50-59 | 0 | 1 | 8 | Uterus | 995 | 127 | Actual Death |
GTEX-YFC4-2826-SM-5P9FR | GTEX-YFC4 | 2 | 40-49 | 1 | 1 | 5.9 | Uterus | 995 | 839 | Actual Death |
GTEX-YJ8O-1126-SM-5P9IS | GTEX-YJ8O | 2 | 40-49 | 1 | 1 | 7.4 | Uterus | 995 | 733 | Actual Death |
GTEX-ZAJG-2826-SM-5HL8D | GTEX-ZAJG | 2 | 50-59 | 3 | 2 | 5.9 | Uterus | 995 | 850 | Actual Death |
GTEX-ZAK1-2526-SM-5S2N7 | GTEX-ZAK1 | 2 | 50-59 | 2 | 1 | 6.7 | Uterus | 995 | 821 | Actual Death |
GTEX-ZLWG-1026-SM-4WWC4 | GTEX-ZLWG | 2 | 50-59 | 0 | 0 | 7.7 | Uterus | 995 | 106 | Actual Death |
GTEX-ZP4G-0726-SM-4WWF2 | GTEX-ZP4G | 2 | 20-29 | 0 | 1 | 8.9 | Uterus | 995 | 190 | Actual Death |
GTEX-ZTPG-2026-SM-5O999 | GTEX-ZTPG | 2 | 20-29 | 0 | 1 | 8.1 | Uterus | 995 | 274 | Actual Death |
GTEX-ZV6S-1526-SM-5NQ7O | GTEX-ZV6S | 2 | 40-49 | 0 | 1 | 5.8 | Uterus | 995 | 393 | Actual Death |
GTEX-ZVT2-0426-SM-5E44S | GTEX-ZVT2 | 2 | 50-59 | 0 | 1 | 7.9 | Uterus | 995 | 91 | Actual Death |
GTEX-ZXES-0726-SM-5E451 | GTEX-ZXES | 2 | 30-39 | 0 | 0 | 8.1 | Uterus | 995 | 96 | Actual Death |
GTEX-ZYVF-0526-SM-5E43E | GTEX-ZYVF | 2 | 50-59 | 0 | 1 | 5.9 | Uterus | 995 | 623 | Actual Death |
GTEX-ZYWO-2126-SM-5GZXF | GTEX-ZYWO | 2 | 40-49 | 0 | 0 | 8.4 | Uterus | 995 | 161 | Actual Death |
Sample | Subject | Gender | Age | DTH-HRDY | SMAT-SSCR | SMRIN | SMTS | SMUBRID | SMTSISCH | SMTSTPTREF |