Uterus networks

Data sets 1 Networks Aggregate 3

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Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

Variable description

PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

SampleSubjectGender
AgeDTH-HRDY
SMAT-SSCR
SMRIN
SMTS
SMUBRID
Isch. time
Time point
GTEX-1117F-2426-SM-5EGGH GTEX-1117F 2 60-69 4 1 6.3 Uterus 995 1332 Actual Death
GTEX-113JC-2226-SM-5EGJG GTEX-113JC 2 50-59 2 1 6.3 Uterus 995 676 Actual Death
GTEX-11DXX-1526-SM-5H115 GTEX-11DXX 2 60-69 0 1 7.7 Uterus 995 118 Actual Death
GTEX-11EM3-1926-SM-5987U GTEX-11EM3 2 20-29 0 0 8.2 Uterus 995 203 Actual Death
GTEX-11EMC-1826-SM-5A5JT GTEX-11EMC 2 60-69 2 1 6.6 Uterus 995 732 Actual Death
GTEX-11GSP-2426-SM-5N9BD GTEX-11GSP 2 60-69 2 2 6.5 Uterus 995 802 Actual Death
GTEX-11I78-2126-SM-5A5K8 GTEX-11I78 2 50-59 0 1 8.3 Uterus 995 145 Actual Death
GTEX-11P81-1626-SM-5BC52 GTEX-11P81 2 30-39 0 0 8.3 Uterus 995 289 Actual Death
GTEX-11ZTS-2326-SM-5EQMY GTEX-11ZTS 2 60-69 2 2 5.8 Uterus 995 701 Actual Death
GTEX-11ZTT-1726-SM-5EQL4 GTEX-11ZTT 2 60-69 0 1 7.9 Uterus 995 204 Actual Death
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