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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks
    v1.6.0 BONOBO networks
    v1.7.0 tcga-data-nf networks

    Uterus networks

    Data sets 1 Networks Aggregate 3

    To get the full list of phenotypic variables, please check the menu below.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference Sonawane et al. (2017) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    # Tissue Tool netZoo release Network
    		 PPI
    		 Regulation prior Expression
    		 Regulator
    		 nReg
    		 Genes Samples Precision
    		 Reference
    1 Uterus PANDA netZooM 0.1
    AdjCodeVis
    		 Motif TF 644 30243 90 D
    2 Uterus PUMA netZooM 0.3
    AdjCodeVis
    		 - miRanda miRNA 643 16161 90 D
    3 Uterus PUMA netZooM 0.3
    AdjCodeVis
    		 - TargetScan miRNA 643 16161 90 D

    Variable description

    PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample Subject Gender
    		Age DTH-HRDY
    		 SMAT-SSCR
    		 SMRIN
    		 SMTS
    		 SMUBRID
    		 Isch. time
    		 Time point
    GTEX-1117F-2426-SM-5EGGH GTEX-1117F 2 60-69 4 1 6.3 Uterus 995 1332 Actual Death
    GTEX-113JC-2226-SM-5EGJG GTEX-113JC 2 50-59 2 1 6.3 Uterus 995 676 Actual Death
    GTEX-11DXX-1526-SM-5H115 GTEX-11DXX 2 60-69 0 1 7.7 Uterus 995 118 Actual Death
    GTEX-11EM3-1926-SM-5987U GTEX-11EM3 2 20-29 0 0 8.2 Uterus 995 203 Actual Death
    GTEX-11EMC-1826-SM-5A5JT GTEX-11EMC 2 60-69 2 1 6.6 Uterus 995 732 Actual Death
    GTEX-11GSP-2426-SM-5N9BD GTEX-11GSP 2 60-69 2 2 6.5 Uterus 995 802 Actual Death
    GTEX-11I78-2126-SM-5A5K8 GTEX-11I78 2 50-59 0 1 8.3 Uterus 995 145 Actual Death
    GTEX-11P81-1626-SM-5BC52 GTEX-11P81 2 30-39 0 0 8.3 Uterus 995 289 Actual Death
    GTEX-11ZTS-2326-SM-5EQMY GTEX-11ZTS 2 60-69 2 2 5.8 Uterus 995 701 Actual Death
    GTEX-11ZTT-1726-SM-5EQL4 GTEX-11ZTT 2 60-69 0 1 7.9 Uterus 995 204 Actual Death
    GTEX-12WSD-2826-SM-59HKT GTEX-12WSD 2 60-69 2 1 7 Uterus 995 553 Actual Death
    GTEX-12WSG-2126-SM-5EGJ7 GTEX-12WSG 2 50-59 0 0 7.7 Uterus 995 382 Actual Death
    GTEX-12WSK-2026-SM-5CVNB GTEX-12WSK 2 40-49 0 1 6.5 Uterus 995 194 Actual Death
    GTEX-12ZZX-2126-SM-5LZVL GTEX-12ZZX 2 40-49 1 1 6.4 Uterus 995 683 Actual Death
    GTEX-1313W-2826-SM-5P9G1 GTEX-1313W 2 50-59 2 1 6.4 Uterus 995 731 Actual Death
    GTEX-131XG-2026-SM-5GCN5 GTEX-131XG 2 50-59 0 1 8.9 Uterus 995 152 Actual Death
    GTEX-131YS-2326-SM-5IJFJ GTEX-131YS 2 60-69 2 1 5.8 Uterus 995 1009 Actual Death
    GTEX-132AR-1526-SM-5KM1L GTEX-132AR 2 50-59 0 0 7 Uterus 995 107 Actual Death
    GTEX-1399S-2226-SM-5IFEW GTEX-1399S 2 30-39 0 1 8.4 Uterus 995 144 Actual Death
    GTEX-1399U-1326-SM-5IJET GTEX-1399U 2 50-59 0 1 6.2 Uterus 995 203 Actual Death
    GTEX-139D8-2526-SM-5N9G3 GTEX-139D8 2 30-39 0 1 5.7 Uterus 995 468 Actual Death
    GTEX-13D11-1226-SM-5IFGA GTEX-13D11 2 50-59 0 1 8 Uterus 995 122 Actual Death
    GTEX-13FTX-1026-SM-5J2O5 GTEX-13FTX 2 20-29 0 0 7.5 Uterus 995 177 Actual Death
    GTEX-13N11-1126-SM-5KM41 GTEX-13N11 2 50-59 0 0 7.6 Uterus 995 172 Actual Death
    GTEX-13OVI-1026-SM-5L3EM GTEX-13OVI 2 60-69 0 1 8.4 Uterus 995 173 Actual Death
    GTEX-13OVJ-2326-SM-5IJGA GTEX-13OVJ 2 50-59 2 1 6.5 Uterus 995 1165 Actual Death
    GTEX-13PL7-2026-SM-5IFGK GTEX-13PL7 2 60-69 0 1 7.8 Uterus 995 172 Actual Death
    GTEX-13QBU-1626-SM-5LU4S GTEX-13QBU 2 40-49 0 1 7.5 Uterus 995 217 Actual Death
    GTEX-13S7M-1726-SM-5RQK3 GTEX-13S7M 2 60-69 2 1 5.9 Uterus 995 614 Actual Death
    GTEX-13U4I-1926-SM-5LU39 GTEX-13U4I 2 40-49 0 1 6.8 Uterus 995 450 Actual Death
    GTEX-13VXT-1626-SM-5IJES GTEX-13VXT 2 20-29 0 1 6.5 Uterus 995 538 Actual Death
    GTEX-13W3W-1426-SM-5LU56 GTEX-13W3W 2 60-69 0 1 7.9 Uterus 995 232 Actual Death
    GTEX-145ME-1326-SM-5O98Q GTEX-145ME 2 40-49 0 1 8.5 Uterus 995 299 Actual Death
    GTEX-14BIM-2226-SM-5SI8Y GTEX-14BIM 2 60-69 3 1 6.9 Uterus 995 1273 Actual Death
    GTEX-14BMU-1826-SM-5RQII GTEX-14BMU 2 20-29 0 1 8.7 Uterus 995 1587 Actual Death
    GTEX-N7MT-0726-SM-3TW8S GTEX-N7MT 2 60-69 4 0 5.5 Uterus 995 512 Actual Death
    GTEX-OHPK-2026-SM-3MJH7 GTEX-OHPK 2 50-59 0 1 6.6 Uterus 995 321 Actual Death
    GTEX-OHPL-2026-SM-3TW8R GTEX-OHPL 2 60-69 0 1 7.6 Uterus 995 154 Actual Death
    GTEX-P4PP-2026-SM-3P61N GTEX-P4PP 2 30-39 0 1 8.1 Uterus 995 151 Actual Death
    GTEX-P4QT-2026-SM-3NMCJ GTEX-P4QT 2 50-59 0 1 7.8 Uterus 995 175 Actual Death
    GTEX-P78B-2526-SM-3P5ZY GTEX-P78B 2 40-49 - 1 8 Uterus 995 615 Actual Death
    GTEX-POMQ-1226-SM-3P61F GTEX-POMQ 2 20-29 0 1 8.4 Uterus 995 265 Actual Death
    GTEX-PWCY-1426-SM-48TCT GTEX-PWCY 2 20-29 0 0 6.7 Uterus 995 255 Actual Death
    GTEX-PWN1-2026-SM-48TD9 GTEX-PWN1 2 40-49 0 1 8.3 Uterus 995 162 Actual Death
    GTEX-PWOO-1526-SM-48TCK GTEX-PWOO 2 40-49 0 1 8.1 Uterus 995 214 Actual Death
    GTEX-PX3G-2026-SM-48U1H GTEX-PX3G 2 20-29 0 1 8.3 Uterus 995 199 Actual Death
    GTEX-Q734-1626-SM-48U1B GTEX-Q734 2 40-49 0 1 7.1 Uterus 995 117 Actual Death
    GTEX-QCQG-1326-SM-48U24 GTEX-QCQG 2 50-59 0 1 8 Uterus 995 234 Actual Death
    GTEX-R55G-1626-SM-48FF4 GTEX-R55G 2 40-49 0 1 8.8 Uterus 995 147 Actual Death
    GTEX-RTLS-2426-SM-46MUO GTEX-RTLS 2 60-69 4 1 7.1 Uterus 995 693 Actual Death
    GTEX-RU1J-1026-SM-46MUR GTEX-RU1J 2 20-29 0 1 8.7 Uterus 995 243 Actual Death
    GTEX-RU72-2626-SM-4GIE1 GTEX-RU72 2 50-59 2 2 6.7 Uterus 995 530 Actual Death
    GTEX-RU72-2626-SM-4TT75 GTEX-RU72 2 50-59 2 2 6.7 Uterus 995 530 Actual Death
    GTEX-RWS6-1326-SM-47JXB GTEX-RWS6 2 60-69 0 1 7.5 Uterus 995 197 Actual Death
    GTEX-S32W-1426-SM-4AD66 GTEX-S32W 2 50-59 0 1 7.3 Uterus 995 331 Actual Death
    GTEX-S341-1026-SM-4AD71 GTEX-S341 2 40-49 0 1 7.1 Uterus 995 190 Actual Death
    GTEX-S4UY-1226-SM-4AD51 GTEX-S4UY 2 40-49 0 1 8 Uterus 995 427 Actual Death
    GTEX-S7SF-0826-SM-4AD4W GTEX-S7SF 2 20-29 0 0 7.9 Uterus 995 298 Actual Death
    GTEX-T2IS-2226-SM-4DM65 GTEX-T2IS 2 20-29 1 2 8.4 Uterus 995 1214 Actual Death
    GTEX-T5JW-1526-SM-4DM5E GTEX-T5JW 2 20-29 0 1 8.1 Uterus 995 235 Actual Death
    GTEX-T6MO-1526-SM-4DM57 GTEX-T6MO 2 40-49 0 1 8.1 Uterus 995 162 Actual Death
    GTEX-TMMY-2226-SM-4DXTN GTEX-TMMY 2 40-49 0 1 7.5 Uterus 995 456 Actual Death
    GTEX-TSE9-2626-SM-4DXV2 GTEX-TSE9 2 60-69 0 1 5.8 Uterus 995 1202 Actual Death
    GTEX-U3ZN-0726-SM-4DXT5 GTEX-U3ZN 2 30-39 0 1 8.8 Uterus 995 123 Actual Death
    GTEX-UPIC-1526-SM-4IHLU GTEX-UPIC 2 20-29 0 1 7.6 Uterus 995 245 Actual Death
    GTEX-W5WG-1326-SM-4LMI9 GTEX-W5WG 2 50-59 0 1 7 Uterus 995 244 Actual Death
    GTEX-WEY5-0726-SM-4LMID GTEX-WEY5 2 40-49 0 1 8.4 Uterus 995 221 Actual Death
    GTEX-WI4N-2426-SM-4OOSC GTEX-WI4N 2 40-49 0 2 6.7 Uterus 995 782 Actual Death
    GTEX-WWYW-2826-SM-4MVOQ GTEX-WWYW 2 50-59 3 2 6.1 Uterus 995 853 Actual Death
    GTEX-WXYG-1326-SM-4ONCN GTEX-WXYG 2 50-59 0 1 7.4 Uterus 995 172 Actual Death
    GTEX-WYVS-1226-SM-4ONCL GTEX-WYVS 2 40-49 0 1 8.2 Uterus 995 268 Actual Death
    GTEX-XUJ4-1526-SM-4BONU GTEX-XUJ4 2 60-69 0 1 8.6 Uterus 995 136 Actual Death
    GTEX-XUW1-0226-SM-4BOOS GTEX-XUW1 2 50-59 0 0 8.8 Uterus 995 284 Actual Death
    GTEX-XUZC-0926-SM-4BOQF GTEX-XUZC 2 30-39 0 1 8.5 Uterus 995 120 Actual Death
    GTEX-XV7Q-1526-SM-4BRWB GTEX-XV7Q 2 40-49 0 1 7.2 Uterus 995 102 Actual Death
    GTEX-XYKS-1626-SM-4BRUQ GTEX-XYKS 2 60-69 0 1 8.2 Uterus 995 208 Actual Death
    GTEX-Y114-1826-SM-4TT87 GTEX-Y114 2 50-59 0 1 8.9 Uterus 995 182 Actual Death
    GTEX-Y3IK-2126-SM-4YCDS GTEX-Y3IK 2 50-59 0 1 8 Uterus 995 127 Actual Death
    GTEX-YFC4-2826-SM-5P9FR GTEX-YFC4 2 40-49 1 1 5.9 Uterus 995 839 Actual Death
    GTEX-YJ8O-1126-SM-5P9IS GTEX-YJ8O 2 40-49 1 1 7.4 Uterus 995 733 Actual Death
    GTEX-ZAJG-2826-SM-5HL8D GTEX-ZAJG 2 50-59 3 2 5.9 Uterus 995 850 Actual Death
    GTEX-ZAK1-2526-SM-5S2N7 GTEX-ZAK1 2 50-59 2 1 6.7 Uterus 995 821 Actual Death
    GTEX-ZLWG-1026-SM-4WWC4 GTEX-ZLWG 2 50-59 0 0 7.7 Uterus 995 106 Actual Death
    GTEX-ZP4G-0726-SM-4WWF2 GTEX-ZP4G 2 20-29 0 1 8.9 Uterus 995 190 Actual Death
    GTEX-ZTPG-2026-SM-5O999 GTEX-ZTPG 2 20-29 0 1 8.1 Uterus 995 274 Actual Death
    GTEX-ZV6S-1526-SM-5NQ7O GTEX-ZV6S 2 40-49 0 1 5.8 Uterus 995 393 Actual Death
    GTEX-ZVT2-0426-SM-5E44S GTEX-ZVT2 2 50-59 0 1 7.9 Uterus 995 91 Actual Death
    GTEX-ZXES-0726-SM-5E451 GTEX-ZXES 2 30-39 0 0 8.1 Uterus 995 96 Actual Death
    GTEX-ZYVF-0526-SM-5E43E GTEX-ZYVF 2 50-59 0 1 5.9 Uterus 995 623 Actual Death
    GTEX-ZYWO-2126-SM-5GZXF GTEX-ZYWO 2 40-49 0 0 8.4 Uterus 995 161 Actual Death
    Sample Subject Gender Age DTH-HRDY SMAT-SSCR SMRIN SMTS SMUBRID SMTSISCH SMTSTPTREF
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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