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    v0.1 cell line networks
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    Vagina networks

    Data sets 1 Networks Aggregate 3

    To get the full list of phenotypic variables, please check the menu below.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference Sonawane et al. (2017) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    # Tissue Tool netZoo release Network
    		 PPI
    		 Regulation prior Expression
    		 Regulator
    		 nReg
    		 Genes Samples Precision
    		 Reference
    1 Vagina PANDA netZooM 0.1
    AdjCodeVis
    		 Motif TF 644 30243 97 D
    2 Vagina PUMA netZooM 0.3
    AdjCodeVis
    		 - miRanda miRNA 643 16161 97 D
    3 Vagina PUMA netZooM 0.3
    AdjCodeVis
    		 - TargetScan miRNA 643 16161 97 D

    Variable description

    PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample Subject Gender
    		Age DTH-HRDY
    		 SMAT-SSCR
    		 SMRIN
    		 SMTS
    		 SMUBRID
    		 Isch. time
    		 Time point
    GTEX-1117F-2526-SM-5GZY6 GTEX-1117F 2 60-69 4 2 6.5 Vagina 996 1329 Actual Death
    GTEX-113JC-1926-SM-5N9GE GTEX-113JC 2 50-59 2 1 5.7 Vagina 996 669 Actual Death
    GTEX-11DXX-1726-SM-5H11T GTEX-11DXX 2 60-69 0 1 7.4 Vagina 996 125 Actual Death
    GTEX-11EM3-1826-SM-5A5KO GTEX-11EM3 2 20-29 0 0 7.8 Vagina 996 201 Actual Death
    GTEX-11EMC-1926-SM-5A5JU GTEX-11EMC 2 60-69 2 2 6.5 Vagina 996 735 Actual Death
    GTEX-11GSP-2226-SM-5HL5Q GTEX-11GSP 2 60-69 2 2 6.6 Vagina 996 790 Actual Death
    GTEX-11I78-2026-SM-5987C GTEX-11I78 2 50-59 0 1 8.7 Vagina 996 143 Actual Death
    GTEX-11P81-2126-SM-5HL6N GTEX-11P81 2 30-39 0 1 7.3 Vagina 996 337 Actual Death
    GTEX-11TTK-2726-SM-5GU58 GTEX-11TTK 2 60-69 4 1 5.9 Vagina 996 1170 Actual Death
    GTEX-11VI4-0726-SM-5GU5B GTEX-11VI4 2 40-49 0 0 8.7 Vagina 996 135 Actual Death
    GTEX-11XUK-1326-SM-5EQM4 GTEX-11XUK 2 40-49 0 0 8.6 Vagina 996 163 Actual Death
    GTEX-12WSB-2426-SM-5EGJC GTEX-12WSB 2 60-69 4 2 6.7 Vagina 996 1163 Actual Death
    GTEX-12WSD-2926-SM-5LZUH GTEX-12WSD 2 60-69 2 1 7.1 Vagina 996 555 Actual Death
    GTEX-12WSJ-1326-SM-5GCOB GTEX-12WSJ 2 40-49 0 1 7.1 Vagina 996 150 Actual Death
    GTEX-12ZZX-1926-SM-5EGKC GTEX-12ZZX 2 40-49 1 1 5.8 Vagina 996 677 Actual Death
    GTEX-131XG-2126-SM-5DUXG GTEX-131XG 2 50-59 0 1 7.9 Vagina 996 156 Actual Death
    GTEX-131YS-2426-SM-5J2OD GTEX-131YS 2 60-69 2 1 6.2 Vagina 996 1010 Actual Death
    GTEX-132AR-1626-SM-5EGHP GTEX-132AR 2 50-59 0 1 8.9 Vagina 996 109 Actual Death
    GTEX-1399S-2326-SM-5K7YV GTEX-1399S 2 30-39 0 1 7 Vagina 996 146 Actual Death
    GTEX-1399U-1526-SM-5J2N7 GTEX-1399U 2 50-59 0 1 6.9 Vagina 996 211 Actual Death
    GTEX-13D11-1326-SM-5IJFY GTEX-13D11 2 50-59 0 0 7.8 Vagina 996 125 Actual Death
    GTEX-13N11-1526-SM-5L3FL GTEX-13N11 2 50-59 0 0 7.4 Vagina 996 182 Actual Death
    GTEX-13OVI-0926-SM-5J1MI GTEX-13OVI 2 60-69 0 1 7.3 Vagina 996 171 Actual Death
    GTEX-13PL7-2726-SM-5L3GB GTEX-13PL7 2 60-69 0 1 7.2 Vagina 996 189 Actual Death
    GTEX-13PVR-1426-SM-5S2PW GTEX-13PVR 2 60-69 0 1 7.7 Vagina 996 134 Actual Death
    GTEX-13QBU-1726-SM-5IJFQ GTEX-13QBU 2 40-49 0 0 8.3 Vagina 996 222 Actual Death
    GTEX-13QIC-1826-SM-5J1MY GTEX-13QIC 2 60-69 2 1 5.8 Vagina 996 830 Actual Death
    GTEX-13U4I-2026-SM-5LU3L GTEX-13U4I 2 40-49 0 0 7 Vagina 996 452 Actual Death
    GTEX-13W3W-2326-SM-5LU4Y GTEX-13W3W 2 60-69 0 1 7.1 Vagina 996 274 Actual Death
    GTEX-145ME-1426-SM-5RQJS GTEX-145ME 2 40-49 0 1 7.2 Vagina 996 302 Actual Death
    GTEX-146FH-2626-SM-5Q5E1 GTEX-146FH 2 50-59 0 1 7.6 Vagina 996 491 Actual Death
    GTEX-146FR-2426-SM-5NQAU GTEX-146FR 2 60-69 0 1 7.4 Vagina 996 1658 Actual Death
    GTEX-147F3-1526-SM-5SIAK GTEX-147F3 2 50-59 0 1 5.9 Vagina 996 524 Actual Death
    GTEX-14A5I-2726-SM-5SIB3 GTEX-14A5I 2 50-59 4 1 6.2 Vagina 996 939 Actual Death
    GTEX-14AS3-1726-SM-5RQJV GTEX-14AS3 2 40-49 0 0 8.7 Vagina 996 141 Actual Death
    GTEX-14BMU-1926-SM-5S2QC GTEX-14BMU 2 20-29 0 0 7.9 Vagina 996 1589 Actual Death
    GTEX-14DAQ-2326-SM-5S2QX GTEX-14DAQ 2 60-69 4 2 6.4 Vagina 996 516 Actual Death
    GTEX-N7MT-1926-SM-3LK5N GTEX-N7MT 2 60-69 4 0 9.5 Vagina 996 502 Actual Death
    GTEX-NL3G-2526-SM-4SOIE GTEX-NL3G 2 60-69 2 1 6.3 Vagina 996 583 Actual Death
    GTEX-OHPK-2526-SM-3MJH9 GTEX-OHPK 2 50-59 0 1 7.3 Vagina 996 321 Actual Death
    GTEX-OHPL-2526-SM-3MJGT GTEX-OHPL 2 60-69 0 1 8.4 Vagina 996 166 Actual Death
    GTEX-P4PP-2526-SM-3P61P GTEX-P4PP 2 30-39 0 0 7.5 Vagina 996 165 Actual Death
    GTEX-P78B-2226-SM-3P5ZZ GTEX-P78B 2 40-49 - 0 7.8 Vagina 996 606 Actual Death
    GTEX-PLZ4-2726-SM-3P61A GTEX-PLZ4 2 50-59 - 1 6.4 Vagina 996 727 Actual Death
    GTEX-PWCY-1726-SM-48TD3 GTEX-PWCY 2 20-29 0 1 8.2 Vagina 996 272 Actual Death
    GTEX-PWN1-2526-SM-48TDS GTEX-PWN1 2 40-49 0 1 8.1 Vagina 996 189 Actual Death
    GTEX-PWOO-2026-SM-48TDE GTEX-PWOO 2 40-49 0 0 7.1 Vagina 996 225 Actual Death
    GTEX-PX3G-2526-SM-48TZV GTEX-PX3G 2 20-29 0 1 8.3 Vagina 996 206 Actual Death
    GTEX-Q734-1426-SM-48TZQ GTEX-Q734 2 40-49 0 2 7.4 Vagina 996 112 Actual Death
    GTEX-QCQG-1226-SM-48U23 GTEX-QCQG 2 50-59 0 1 8.4 Vagina 996 233 Actual Death
    GTEX-QDT8-2526-SM-48TYX GTEX-QDT8 2 30-39 4 2 7.4 Vagina 996 659 Actual Death
    GTEX-QVJO-2526-SM-4R1KB GTEX-QVJO 2 60-69 4 1 6.8 Vagina 996 1283 Actual Death
    GTEX-RU1J-1426-SM-46MUV GTEX-RU1J 2 20-29 0 0 8.1 Vagina 996 263 Actual Death
    GTEX-RWS6-1726-SM-47JXP GTEX-RWS6 2 60-69 0 1 7.3 Vagina 996 220 Actual Death
    GTEX-S341-1226-SM-4AD5S GTEX-S341 2 40-49 0 1 8.9 Vagina 996 196 Actual Death
    GTEX-S4P3-1126-SM-4AD52 GTEX-S4P3 2 50-59 0 1 7.4 Vagina 996 205 Actual Death
    GTEX-S4UY-1326-SM-4AD4X GTEX-S4UY 2 40-49 0 1 7.9 Vagina 996 428 Actual Death
    GTEX-S7SF-1426-SM-4AT5A GTEX-S7SF 2 20-29 0 0 7.8 Vagina 996 324 Actual Death
    GTEX-SE5C-1126-SM-4BRWZ GTEX-SE5C 2 40-49 0 0 8.4 Vagina 996 186 Actual Death
    GTEX-T2IS-1926-SM-4DM74 GTEX-T2IS 2 20-29 1 1 6.5 Vagina 996 1206 Actual Death
    GTEX-T6MO-1226-SM-4DM5S GTEX-T6MO 2 40-49 0 1 8.5 Vagina 996 152 Actual Death
    GTEX-TML8-1126-SM-4DXSS GTEX-TML8 2 40-49 0 1 8 Vagina 996 160 Actual Death
    GTEX-TMMY-1926-SM-4DXUU GTEX-TMMY 2 40-49 0 1 8 Vagina 996 449 Actual Death
    GTEX-TSE9-2526-SM-4DXUS GTEX-TSE9 2 60-69 0 2 6.8 Vagina 996 1199 Actual Death
    GTEX-U3ZN-0926-SM-4DXTU GTEX-U3ZN 2 30-39 0 0 8.2 Vagina 996 125 Actual Death
    GTEX-UJHI-1326-SM-4IHJO GTEX-UJHI 2 50-59 0 0 6.5 Vagina 996 253 Actual Death
    GTEX-UPIC-1426-SM-4IHLQ GTEX-UPIC 2 20-29 0 0 7.3 Vagina 996 243 Actual Death
    GTEX-W5WG-1026-SM-4LMIF GTEX-W5WG 2 50-59 0 2 6.9 Vagina 996 230 Actual Death
    GTEX-WEY5-0826-SM-4LMIH GTEX-WEY5 2 40-49 0 1 7.1 Vagina 996 228 Actual Death
    GTEX-WRHU-2926-SM-4MVNQ GTEX-WRHU 2 50-59 1 1 5.9 Vagina 996 575 Actual Death
    GTEX-WYVS-1426-SM-4ONCV GTEX-WYVS 2 40-49 0 1 8.9 Vagina 996 278 Actual Death
    GTEX-X15G-1926-SM-4PQZQ GTEX-X15G 2 50-59 0 1 7.3 Vagina 996 315 Actual Death
    GTEX-X8HC-2826-SM-46MWJ GTEX-X8HC 2 50-59 0 1 6.4 Vagina 996 834 Actual Death
    GTEX-XUJ4-1626-SM-4BONV GTEX-XUJ4 2 60-69 0 1 8.1 Vagina 996 146 Actual Death
    GTEX-XUW1-0326-SM-4BOOR GTEX-XUW1 2 50-59 0 0 6.7 Vagina 996 287 Actual Death
    GTEX-XV7Q-1626-SM-4BRWC GTEX-XV7Q 2 40-49 0 2 7.5 Vagina 996 104 Actual Death
    GTEX-Y114-1926-SM-4TT8J GTEX-Y114 2 50-59 0 1 8.2 Vagina 996 191 Actual Death
    GTEX-Y3IK-2226-SM-4YCD4 GTEX-Y3IK 2 50-59 0 1 8.9 Vagina 996 130 Actual Death
    GTEX-Y8LW-1426-SM-5RQJJ GTEX-Y8LW 2 50-59 0 1 7.5 Vagina 996 265 Actual Death
    GTEX-YFC4-2926-SM-5IFJ8 GTEX-YFC4 2 40-49 1 2 7.1 Vagina 996 841 Actual Death
    GTEX-YJ8O-1226-SM-5P9JE GTEX-YJ8O 2 40-49 1 1 7.3 Vagina 996 735 Actual Death
    GTEX-ZAJG-2926-SM-5HL8P GTEX-ZAJG 2 50-59 3 1 6.9 Vagina 996 852 Actual Death
    GTEX-ZC5H-2226-SM-4WAWS GTEX-ZC5H 2 40-49 0 1 8.1 Vagina 996 309 Actual Death
    GTEX-ZE7O-2426-SM-57WD7 GTEX-ZE7O 2 50-59 2 2 6.3 Vagina 996 1222 Presumed Death
    GTEX-ZGAY-2226-SM-4YCCX GTEX-ZGAY 2 40-49 0 0 6.6 Vagina 996 283 Actual Death
    GTEX-ZLWG-1126-SM-4WWFQ GTEX-ZLWG 2 50-59 0 0 8.8 Vagina 996 114 Actual Death
    GTEX-ZP4G-0826-SM-4WWF3 GTEX-ZP4G 2 20-29 0 1 8.2 Vagina 996 198 Actual Death
    GTEX-ZQG8-1126-SM-51MRL GTEX-ZQG8 2 60-69 0 1 6.2 Vagina 996 160 Actual Death
    GTEX-ZTPG-2226-SM-57WF9 GTEX-ZTPG 2 20-29 0 1 7.5 Vagina 996 280 Actual Death
    GTEX-ZV6S-1326-SM-59HJA GTEX-ZV6S 2 40-49 0 1 6.4 Vagina 996 384 Actual Death
    GTEX-ZVT2-0626-SM-5GICR GTEX-ZVT2 2 50-59 0 1 8.4 Vagina 996 96 Actual Death
    GTEX-ZVT3-2726-SM-5GU5X GTEX-ZVT3 2 60-69 2 1 6.2 Vagina 996 643 Actual Death
    GTEX-ZXES-0626-SM-5E45P GTEX-ZXES 2 30-39 0 0 8.9 Vagina 996 93 Actual Death
    GTEX-ZYVF-0326-SM-5GIES GTEX-ZYVF 2 50-59 0 1 6.1 Vagina 996 619 Actual Death
    GTEX-ZYWO-2026-SM-5GIDA GTEX-ZYWO 2 40-49 0 0 6.6 Vagina 996 158 Actual Death
    GTEX-ZYY3-2626-SM-5N9DH GTEX-ZYY3 2 60-69 4 2 7.3 Vagina 996 536 Actual Death
    GTEX-ZZPU-2226-SM-5EGIV GTEX-ZZPU 2 50-59 0 0 9.2 Vagina 996 234 Actual Death
    Sample Subject Gender Age DTH-HRDY SMAT-SSCR SMRIN SMTS SMUBRID SMTSISCH SMTSTPTREF

    Variable description

    BONOBO-PANDA networks are single-sample networks generated by first estimating single-sample co-expression networks for each sample and then running PANDA on each single-sample co-expression with motif and PPI data. The table below has a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network. It is possible to download each network individually by selecting the sample network to download. The network file has a TF-by-gene (997x26469) matrix named after the GTEx sample reference.

    Sample Subject Gender
    		Age DTH-HRDY
    		 SMAT-SSCR
    		 SMRIN
    		 SMTS
    		 SMUBRID
    		 Isch. time
    		 Proxy age
    Sample Subject Gender Age DTH-HRDY SMAT-SSCR SMRIN SMTS SMUBRID SMTSISCH Proxy age
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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